Wouter Boomsma : rechercher sur Z-Library

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1

Pivotal Response Treatment for autism spectrum disorder (ASD)

Smeekens, Iris, Oosterling, Iris J, den Boer, Jenny C, Buitelaar, Jan K, Staal, Wouter G, van Dongen-Boomsma, Martine

Journal:

Cochrane database of systematic reviews

Année:

2017

Langue:

english

Fichier:

PDF, 331 KB

english, 2017

2

PHAISTOS: A framework for Markov chain Monte Carlo simulation and inference of protein structure

Boomsma, Wouter, Frellsen, Jes, Harder, Tim, Bottaro, Sandro, Johansson, Kristoffer E., Tian, Pengfei, Stovgaard, Kasper, Andreetta, Christian, Olsson, Simon, Valentin, Jan B., Antonov, Lubomir D., Ch

Journal:

Journal of Computational Chemistry

Année:

2013

Langue:

english

Fichier:

PDF, 660 KB

english, 2013

3

Monte Carlo Sampling of Protein Folding by Combining an All-Atom Physics-Based Model with a Native State Bias

Wang, Yong, Tian, Pengfei, Boomsma, Wouter, Lindorff-Larsen, Kresten

Journal:

Journal of Physical Chemistry B

Année:

2018

Langue:

english

Fichier:

PDF, 9.12 MB

english, 2018

4

Generative probabilistic models extend the scope of inferential structure determination

Simon Olsson, Wouter Boomsma, Jes Frellsen, Sandro Bottaro, Tim Harder, Jesper Ferkinghoff-Borg, Thomas Hamelryck

Journal:

Journal of Magnetic Resonance

Année:

2011

Langue:

english

Fichier:

PDF, 718 KB

english, 2011

5

An Efficient Null Model for Conformational Fluctuations in Proteins

Tim Harder, Mikael Borg, Sandro Bottaro, Wouter Boomsma, Simon Olsson, Jesper Ferkinghoff-Borg, Thomas Hamelryck

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 1.01 MB

english, 2012

6

Beyond rotamers: a generative, probabilistic model of side chains in proteins

Tim Harder, Wouter Boomsma, Martin Paluszewski, Jes Frellsen, Kristoffer E Johansson, Thomas Hamelryck

Journal:

BMC Bioinformatics

Année:

2010

Langue:

english

Fichier:

PDF, 1.39 MB

english, 2010

7

Full cyclic coordinate descent: solving the protein loop closure problem in Cαspace

Wouter Boomsma, Thomas Hamelryck

Journal:

BMC Bioinformatics

Année:

2005

Langue:

english

Fichier:

PDF, 525 KB

english, 2005

8

Formulation of probabilistic models of protein structure in atomic detail using the reference ratio method

Valentin, Jan B., Andreetta, Christian, Boomsma, Wouter, Bottaro, Sandro, Ferkinghoff-Borg, Jesper, Frellsen, Jes, Mardia, Kanti V., Tian, Pengfei, Hamelryck, Thomas

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

2014

Langue:

english

Fichier:

PDF, 3.02 MB

english, 2014

9

A Sticky Cage can Slow Down Folding

Boomsma, Wouter, Lindorff-Larsen, Kresten

Journal:

Biophysical Journal

Année:

2013

Langue:

english

Fichier:

PDF, 70 KB

english, 2013

10

Robust Estimation of Diffusion-Optimized Ensembles for Enhanced Sampling

Tian, Pengfei, Jónsson, Sigurður, Ferkinghoff-Borg, Jesper, Krivov, Sergei, Lindorff-Larsen, Kresten, Boomsma, Wouter

Journal:

Biophysical Journal

Année:

2014

Langue:

english

Fichier:

PDF, 78 KB

english, 2014

11

Subtle Monte Carlo Updates in Dense Molecular Systems

Bottaro, Sandro, Boomsma, Wouter, E. Johansson, Kristoffer, Andreetta, Christian, Hamelryck, Thomas, Ferkinghoff-Borg, Jesper

Journal:

Journal of Chemical Theory and Computation

Année:

2012

Langue:

english

Fichier:

PDF, 3.61 MB

english, 2012

12

Robust Estimation of Diffusion-Optimized Ensembles for Enhanced Sampling

Tian, Pengfei, Jónsson, Sigurdur Æ., Ferkinghoff-Borg, Jesper, Krivov, Sergei V., Lindorff-Larsen, Kresten, Irbäck, Anders, Boomsma, Wouter

Journal:

Journal of Chemical Theory and Computation

Année:

2014

Langue:

english

Fichier:

PDF, 1.25 MB

english, 2014

13

Probabilistic Determination of Native State Ensembles of Proteins

Olsson, Simon, Vögeli, Beat Rolf, Cavalli, Andrea, Boomsma, Wouter, Ferkinghoff-Borg, Jesper, Lindorff-Larsen, Kresten, Hamelryck, Thomas

Journal:

Journal of Chemical Theory and Computation

Année:

2014

Langue:

english

Fichier:

PDF, 2.23 MB

english, 2014

14

Structure of a Functional Amyloid Protein Subunit Computed Using Sequence Variation

Tian, Pengfei, Boomsma, Wouter, Wang, Yong, Otzen, Daniel E., Jensen, Mogens H., Lindorff-Larsen, Kresten

Journal:

Journal of the American Chemical Society

Année:

2015

Langue:

english

Fichier:

PDF, 1.11 MB

english, 2015

15

Statistical Assignment of DNA Sequences Using Bayesian Phylogenetics

Munch, Kasper, Boomsma, Wouter, Huelsenbeck, John, Willerslev, Eske, Nielsen, Rasmus

Journal:

Systematic Biology

Année:

2008

Langue:

english

Fichier:

PDF, 133 KB

english, 2008

16

A girl with multiple cranial nerve palsies

Quak, Wouter, Boomsma, Martijn F, Klok, Ted

Journal:

Journal of Paediatrics and Child Health

Année:

2015

Langue:

english

Fichier:

PDF, 340 KB

english, 2015

17

Conformational and aggregation properties of the 1-93 fragment of apolipoprotein A-I

Petrlova, Jitka, Bhattacherjee, Arnab, Boomsma, Wouter, Wallin, Stefan, Lagerstedt, Jens O., Irbäck, Anders

Journal:

Protein Science

Année:

2014

Langue:

english

Fichier:

PDF, 985 KB

english, 2014

18

Combining Experiments and Simulations Using the Maximum Entropy Principle

Boomsma, Wouter, Ferkinghoff-Borg, Jesper, Lindorff-Larsen, Kresten, Levitt, Michael

Journal:

PLoS Computational Biology

Année:

2014

Langue:

english

Fichier:

PDF, 1.40 MB

english, 2014

19

[ 123 I]Metaiodobenzylguanidine and[ 111 In]Octreotide Uptake in Benign and Malignant Pheochromocytomas 1

van der Harst, Erwin, de Herder, Wouter W., Bruining, Hajo A., Bonjer, H. Jaap, de Krijger, Ronald R., Lamberts, Steven W. J., van de Meiracker, Anton H., Boomsma, Frans, Stijnen, Theo, Krenning, Eric

Journal:

Journal of Clinical Endocrinology & Metabolism

Année:

2001

Langue:

english

Fichier:

PDF, 672 KB

english, 2001

20

Disease and Polygenic Architecture: Avoid Trio Design and Appropriately Account for Unscreened Control Subjects for Common Disease

Peyrot, Wouter J., Boomsma, Dorret I., Penninx, Brenda W.J.H., Wray, Naomi R.

Journal:

The American Journal of Human Genetics

Année:

2016

Langue:

english

Fichier:

PDF, 591 KB

english, 2016

21

Rapid expansion of the protein disulfide isomerase gene family facilitates the folding of venom peptides

Safavi-Hemami, Helena, Li, Qing, Jackson, Ronneshia L., Song, Albert S., Boomsma, Wouter, Bandyopadhyay, Pradip K., Gruber, Christian W., Purcell, Anthony W., Yandell, Mark, Olivera, Baldomero M., Ell

Journal:

Proceedings of the National Academy of Sciences

Année:

2016

Langue:

english

Fichier:

PDF, 1.66 MB

english, 2016

22

What does Evolution Tell us about the Structure of a Functional Amyloid Protein?

Tian, Pengfei, Boomsma, Wouter, Wang, Yong, Otzen, Daniel Erik, Jensen, Mogens Høgh, Lindorff-Larsen, Kresten

Journal:

Biophysical Journal

Année:

2015

Langue:

english

Fichier:

PDF, 40 KB

english, 2015

23

Structure of the Bacterial Cytoskeleton Protein Bactofilin by NMR Chemical Shifts and Sequence Variation

Kassem, Maher M., Wang, Yong, Boomsma, Wouter, Lindorff-Larsen, Kresten

Journal:

Biophysical Journal

Année:

2016

Langue:

english

Fichier:

PDF, 834 KB

english, 2016

24

Statistical Assignment of DNA Sequences Using Bayesian Phylogenetics

Kasper Munch, Wouter Boomsma, John P. Huelsenbeck, Eske Willerslev and Rasmus Nielsen

Journal:

Systematic Biology

Année:

2008

Langue:

english

Fichier:

PDF, 1.54 MB

english, 2008

25

Statistical and Computational Challenges in Molecular Phylogenetics and Evolution || Fast Phylogenetic DNA Barcoding

Kasper Munch, Wouter Boomsma, Eske Willerslev and Rasmus Nielsen

Journal:

Philosophical Transactions Biological Sciences

Année:

2008

Langue:

english

Fichier:

PDF, 1.10 MB

english, 2008

26

Using Clinical Characteristics to Identify Which Patients With Major Depressive Disorder Have a Higher Genetic Load for Three Psychiatric Disorders

Verduijn, Judith, Milaneschi, Yuri, Peyrot, Wouter J., Hottenga, Jouke Jan, Abdellaoui, Abdel, de Geus, Eco J.C., Smit, Johannes H., Breen, Gerome, Lewis, Cathryn M., Boomsma, Dorret I., Beekman, Aart

Journal:

Biological Psychiatry

Année:

2016

Langue:

english

Fichier:

PDF, 1.78 MB

english, 2016

27

Europe PMC Funders Group Ancient Biomolecules from Deep Ice Cores Reveal a Forested Southern Greenland

Willerslev, Eske, Cappellini, Enrico, Boomsma, Wouter, Nielsen, Rasmus, Martin, B, Brand, Tina B, Hofreiter, Michael, Bunce, Michael, Poinar, Hendrik N, Dahl-jensen, Dorthe, Johnsen, Sigfus, Steffense

Année:

2009

Langue:

english

Fichier:

PDF, 602 KB

english, 2009

28

Esophageal Fistula after EUS-FNA in a Patient Treated with Bevacizumab for Non–Small-Cell Lung Cancer

Stigt, Jos A., Boomsma, Martijn F., de Vos tot Nederveen Cappel, Wouter H.

Journal:

Journal of Thoracic Oncology

Année:

2013

Langue:

english

Fichier:

PDF, 256 KB

english, 2013

29

Driving Structural Transitions in Molecular Simulations Using Nonequilibrium Candidate Monte Carlo

Kurut, Anıl, Fonseca, Rasmus, Boomsma, Wouter

Journal:

Journal of Physical Chemistry B

Année:

2017

Langue:

english

Fichier:

PDF, 5.23 MB

english, 2017

30

F129. Immunometabolic Depression: A Unique Biological and Genetic Profile

Milaneschi, Yuri, Peyrot, Wouter, Lamers, Femke, Boomsma, Dorret, Penninx, Brenda

Journal:

Biological Psychiatry

Année:

2018

Langue:

english

Fichier:

PDF, 65 KB

english, 2018

31

ENCORE: Software for Quantitative Ensemble Comparison

Tiberti, Matteo, Papaleo, Elena, Bengtsen, Tone, Boomsma, Wouter, Lindorff-Larsen, Kresten, de Groot, Bert L.

Journal:

PLoS Computational Biology

Année:

2015

Langue:

english

Fichier:

PDF, 1.36 MB

english, 2015

32

Protein Structure Validation and Refinement Using Amide Proton Chemical Shifts Derived from Quantum Mechanics

Christensen, Anders S., Linnet, Troels E., Borg, Mikael, Boomsma, Wouter, Lindorff-Larsen, Kresten, Hamelryck, Thomas, Jensen, Jan H., Salsbury, Freddie

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 1023 KB

english, 2013

33

Comparing Molecular Dynamics Force Fields in the Essential Subspace

Martín-García, Fernando, Papaleo, Elena, Gomez-Puertas, Paulino, Boomsma, Wouter, Lindorff-Larsen, Kresten, Roccatano, Danilo

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 3.99 MB

english, 2015

34

Barnaba: Software for Analysis of Nucleic Acids Structures and Trajectories

Bottaro, Sandro, Bussi, Giovanni, Pinamonti, Giovanni, Reißer, Sabine, Boomsma, Wouter, Lindorff-Larsen, Kresten

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 4.72 MB

english, 2018

35

The PCNA interaction motifs revisited: thinking outside the PIP-box

Prestel, Andreas, Wichmann, Nanna, Martins, Joao M., Marabini, Riccardo, Kassem, Noah, Broendum, Sebastian S., Otterlei, Marit, Nielsen, Olaf, Willemoës, Martin, Ploug, Michael, Boomsma, Wouter, Krage

Journal:

Cellular and Molecular Life Sciences

Année:

2019

Langue:

english

Fichier:

PDF, 6.79 MB

english, 2019

36

A role for vitamin D and omega-3 fatty acids in major depression? An exploration using genomics

Milaneschi, Yuri, Peyrot, Wouter J., Nivard, Michel G., Mbarek, Hamdi, Boomsma, Dorret I., W.J.H. Penninx, Brenda

Journal:

Translational Psychiatry

Année:

2019

Langue:

english

Fichier:

PDF, 688 KB

english, 2019

37

Random coil chemical shifts for serine, threonine and tyrosine phosphorylation over a broad pH range

Hendus-Altenburger, Ruth, Fernandes, Catarina B., Bugge, Katrine, Kunze, Micha B. A., Boomsma, Wouter, Kragelund, Birthe B.

Journal:

Journal of Biomolecular NMR

Année:

2019

Langue:

english

Fichier:

PDF, 889 KB

english, 2019

38

IDDomainSpotter: Compositional bias reveals domains in long disordered protein regions ‐ insights from transcription factors

Millard, Peter S., Bugge, Katrine, Marabini, Riccardo, Boomsma, Wouter K., Burow, Meike, Kragelund, Birthe B.

Journal:

Protein Science

Année:

2019

Fichier:

PDF, 3.95 MB

2019

39

Context Matters in Disorder Based Protein Communication

Kragelund, Birthe B., Prestel, Andreas, Wickmann, Nanna, Martins, Joao, Boomsma, Wouter, Staby, Lasse, Hendus-Altenburger, Ruth, Skriver, Karen

Journal:

Biophysical Journal

Année:

2020

Fichier:

PDF, 39 KB

2020

40

Orchestration of signaling by structural disorder in class 1 cytokine receptors

Seiffert, Pernille, Bugge, Katrine, Nygaard, Mads, Haxholm, Gitte W., Martinsen, Jacob H., Pedersen, Martin N., Arleth, Lise, Boomsma, Wouter, Kragelund, Birthe B.

Journal:

Cell Communication and Signaling

Année:

2020

Fichier:

PDF, 2.20 MB

2020